PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0121s00440.1
Common NameLR48_Vigan03g256800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 74aa    MW: 8646.66 Da    PI: 6.5156
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0121s00440.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.6e-091053344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +WT    +++ +a  ++G +   +W+ Ia+++g  ++ +++k ++
  Vang0121s00440.1 10 SWTRLQNKQFEKALVLYGEDtpdRWHNIAKEVG-DKSVEEVKRHY 53
                      7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.186661IPR017884SANT domain
SMARTSM007173.1E-8759IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-12965IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-9963IPR009057Homeodomain-like
CDDcd001671.69E-61053No hitNo description
PfamPF002494.5E-71053IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MNNKEQRHSS WTRLQNKQFE KALVLYGEDT PDRWHNIAKE VGDKSVEEVK RHYAILLEDV  60
SRIESGHVPI PEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-2111731173RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-121AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163428.18e-39hypothetical protein PHAVU_001G233900g
SwissprotQ1A1737e-29RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0L9U8Z86e-49A0A0L9U8Z8_PHAAN; Uncharacterized protein
STRINGGLYMA14G07280.29e-34(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.24e-30RAD-like 6
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]